Mercury BLASTN Biosequence Similarity Search System: Technical

Reference Guide

http://cse.wustl.edu/Research/Lists/Technical%20Reports/Attachments/953/gblast-reference-guide%5B1%5D.pdf

Hardware-based comparison of DNA sequences

http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=684561&tag=1#Index Terms

FASTA [13] and BLAST [4]

13. Pearson, W.R.: Searching protein sequence libraries: comparison of the sensitivity

and selectivity of the smith-waterman and FASTA algorithms. Genomics 11 (1991)

14. Petrini, F., Fossum, G., Fern´andez, J., Varbanescu, A.L., Kistler, M., Perrone, M.:

Multicore surprises: Lessons learned from optimizing sweep3d on the cell broadband engine. In: IPDPS, pp. 1–10 (2007)

4. Altschul, S.F., Madden, T.L., Schffer, A., Zhang, J., Zhang, Z., Miller, W., Lipman, D.: Gapped blast and psi-blast: a new generation of protein database serach

programs. Nucleic acids research 25, 3389–3402 (1997)

Jounal:

• Long DNA Sequence Comparison on Multicore Architectures
  http://personals.ac.upc.edu/fsanchez/research/papers/europar_2011.pdf

Conference:

• Optimization of DNA Sequences Data to Accelerate DNA Sequence Alignment on FPGA
  http://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=5489221
• Hardware accelerator architecture for simultaneous short-read DNA sequences alignment with enhanced traceback phase
  http://www.sciencedirect.com/science/article/pii/S0141933111000639

Other:

• 454生物科學和焦磷酸測序法

  454測序法由454生物科學發明，是一個類似焦磷酸測序法的新方法。2003年向GenBank提交了一個腺病毒全序列^[3]，使得他們的技術成為Sanger測序法後第一個被用來測生物基因組全序列的新方法。454使用類似於焦磷酸測序的方法，有著相當高的讀取速度，大約為5小時可以測兩千萬鹼基對
  http://zh.wikipedia.org/wiki/DNA%E6%B5%8B%E5%BA%8F